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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015906342.1_cds_XP_016456529.1_50354
CDS Infomation

[gene=LOC107780493] [db_xref=GeneID:107780493] [protein=probable pectate lyase 4] [protein_id=XP_016456529.1] [location=complement(join(41849..42100,43752..43820,43899..44109,44192..44543,47071..47197))] [gbkey=CDS]
Sequence

ATGGCGGTGTTACCATATTCTGATGTAGATTCGAGCTTAAAAGCTCTAGCCGGTCGAGCC
GAAGGATTTGGCAGGTTTTCCATCGGTGGTCTAAACGGTCCGGTCTATTCCGTCACTACA
TTGGCCGATGATGGTTCAGGATCACTTCGTGATGGATGCCGTAAGAAAGAACCACTATGG
ATTGTTTTTGAAGTTTCAGGCACCATTCATCTCGCGTCTTACCTACGTGTATCATCTTAT
AAAACTATTGATGGCCGTGGCCAAAGGATAAAACTCACTGGCAAAGGCTTACAACTGAAG
GATTGTGAGCACATAATCATATGCAATTTGGAGTTTGAAGGTGGCAGAGGTCATGACGTT
GATGGCATTCAAATAAAACCAAATTCTAGGCACATTTGGATAGACCGATGTTCTCTTCGT
GATTATGATGATGGGCTAATCGATATAACCAGACAAAGCACAGATATCACTATTTCTAGA
TGTTATTTTGCTCAGCATGATAAGACAATGCTTATTGGAGCAGACCCGTCTCATATTGGT
GATAGATGTATCAGAGTGACCATCCACCATTGCTTTTTTGACGGGACACGGCAGAGGCAA
CCTCGTGTTAGATTTGGAAAAGTTCATCTGTACAACAATTACACTAGAAATTGGGGTATA
TATGCTATTTGTGCCAGCGTAGAATCACAGATACATTCCCAATGCAACATATATGAAGCT
ACACAGAAGAAAAAAGCTTTTGAATACTACACAGAGAAGGCAGCAGATAAGGAAGAAGCA
AGGACAGGTTTAATCAGATCTGAAGGGGACTTGTTTCTCAATGGAGCTCAGGGAATGTTG
TTAACAGGTGTTGGTGAAGAGTGTGTTTTTCATCCAAGTGAATTTTACCCTGTCTGGACA
CTGGAACCTGCCTCAGACTCCCTCAAAGCTGTTCTCCAGATCTGCACAGGTTGGCAATCT
ATTCCCCGGCCACCTGAAGTGTGTGCTGATCATATGAAACCTGCATGCTAG

Peptide Sequence

PEP ID

XP_016456529.1
PEP Infomation

PREDICTED: probable pectate lyase 4 [Nicotiana tabacum]
Sequence

MAVLPYSDVDSSLKALAGRAEGFGRFSIGGLNGPVYSVTTLADDGSGSLRDGCRKKEPLW
IVFEVSGTIHLASYLRVSSYKTIDGRGQRIKLTGKGLQLKDCEHIIICNLEFEGGRGHDV
DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPSHIG
DRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAICASVESQIHSQCNIYEA
TQKKKAFEYYTEKAADKEEARTGLIRSEGDLFLNGAQGMLLTGVGEECVFHPSEFYPVWT
LEPASDSLKAVLQICTGWQSIPRPPEVCADHMKPAC

Transcript Sequence

Gene sequence data has not been registered.